PRISM Mentors

Dr. Carmichael is a perinatal and nutritional epidemiologist and Professor of Pediatrics and Obstetrics and Gynecology at the Stanford University School of Medicine. Her research focuses on finding ways to improve maternal and infant health. Exposure themes include nutrition, social context, care, environmental contaminants and genetics. Outcome themes include severe maternal morbidity, stillbirth, birth defects, and preterm delivery. She is particularly interested in understanding the intersectionality of these varied types of exposures and outcomes and how they interact to impact health and health disparities, for the mother-baby dyad, in domestic as well as global health settings. She currently (mid 2020) has an opening in her lab for a post-doc focused on maternal health.

Our team is committed to finding ways to improve maternal and infant health outcomes and equity by leading research that identifies effective leverage points for change, from upstream 'macro' social and structural factors, to downstream 'micro' clinical factors through a collaborative research approach that integrates epidemiologic approaches with community engagement and systems thinking.

Disparities are prominent in maternal and infant health, so a lot of our work is centered on equity.  Focusing on highest-risk groups will improve health for everyone.

Much of our current research focuses on severe maternal morbidity (SMM). SMM encompasses adverse conditions that put pregnant people at risk of short and long-term consequences related to labor and delivery, including death.

We also study other important perinatal outcomes, including stillbirth, preterm birth, structural congenital malformations and other maternal morbidities.  We are interested in these outcomes individually, as well as in how they are connected to each other -- from a mechanistic standpoint (ie, do they share the same causes), and a lifecourse perspective (eg, how does an adverse newborn outcome affect the mom's postpartum health, and vice versa).

Dr. Carmichael's training is in perinatal and nutritional epidemiology.  She deeply appreciates her multi-disciplinary colleagues who make this work more meaningful by bringing their own varied perspectives and lived experiences, and their expertise in clinical care, qualitative and mixed methods, community engagement, and state-of-the-art epidemiologic approaches and biostatistical methods.

Our team is committed to finding ways to improve maternal and infant health outcomes and equity by leading research that identifies effective leverage points for change, from upstream 'macro' social and structural factors, to downstream 'micro' clinical factors through a collaborative research approach that integrates epidemiologic approaches with community engagement and systems thinking.

Disparities are prominent in maternal and infant health, so a lot of our work is centered on equity.  Focusing on highest-risk groups will improve health for everyone.

Much of our current research focuses on severe maternal morbidity (SMM). SMM encompasses adverse conditions that put pregnant people at risk of short and long-term consequences related to labor and delivery, including death.

We also study other important perinatal outcomes, including stillbirth, preterm birth, structural congenital malformations and other maternal morbidities.  We are interested in these outcomes individually, as well as in how they are connected to each other -- from a mechanistic standpoint (ie, do they share the same causes), and a lifecourse perspective (eg, how does an adverse newborn outcome affect the mom's postpartum health, and vice versa).

Dr. Carmichael's training is in perinatal and nutritional epidemiology.  She deeply appreciates her multi-disciplinary colleagues who make this work more meaningful by bringing their own varied perspectives and lived experiences, and their expertise in clinical care, qualitative and mixed methods, community engagement, and state-of-the-art epidemiologic approaches and biostatistical methods.

Our lab seeks to understand the molecular basis of inherited Parkinson's Disease.  Activating mutations in the LRRK2 kinase cause Parkinson's , and the major substrates of LRRK2 kinase are a subset of proteins called Rab GTPases.  Together with our collaborators, we have discovered that phosphorylation of Rab proteins completely changes the partner proteins with which they interact and leads to a blockade in the formation of critical signaling structures called primary cilia.  We are using biochemical, cell biological and genome-wide approaches to study the molecular cell biology of Parkinson's Disease by focusing on the consequences of Rab GTPase phosphorylation.  Our work includes single molecule biochemical experiments to undertstand the kinase and its corresponding phosphatase--how they are recruited to membranes and activated.  We also study LRRK2-mediated loss of cilia in specific neuronal cell types and astrocytes in both mouse and human brains.  We are using state of the art microscopic tools to understand why cilia are lost and how this leads to Parkinson's disease.

Stoyanova lab is interested in understanding fundamental molecular mechanisms underlying the development of epithelial cancers and their utility as biomarkers and therapeutic targets. Currently, the major focus of our group is in prostate cancer. We are also interested in breast and neuroendocrine cancers. The ultimate goals of the laboratory are to: 1) improve the stratification of indolent from aggressive prostate cancer and 2) guide the development of novel and effective therapeutic strategies for metastatic cancers.

Our research focuses on genetic forms of hearing loss and vestibular dysfunction. As many features of the auditory/vestibular system are highly conserved among vertebrates, we use zebrafish as our animal model and have identified over a dozen genes that are required for hearing and balance. Our studies have yielded important insights into the molecular basis of sensory hair-cell function, especially with regard to mechanotransduction and synaptic transmission. To understand the function of deafness genes and delve deeper into the underlying biology, our lab uses a wide range of methods to analyze mutant phenotypes including live cell imaging, physiological experiments, CRISPR gene editing, transcriptomic methods, and auditory/vestibular behavioral analyses.

Department URL:
https://med.stanford.edu/ohns.html

Stanford Solutions Science Lab.

The Stanford Solutions Science Lab designs solutions to improve health and well-being of children, families, and the planet.  Dr. Robinson originated the solution-oriented research paradigm. He is known for his pioneering obesity prevention and treatment research, including the concept of stealth interventions. His research applies social cognitive models of behavior change to behavioral, social, environmental and policy interventions for children and families in real world settings, making the results relevant for informing clinical and public health practice and policy. His research is largely experimental, conducting rigorous school-, family- and community-based randomized controlled trials. He studies obesity and disordered eating, nutrition, physical activity/inactivity and sedentary behavior, the effects of television and other screen time, adolescent smoking, aggressive behavior, consumerism, and behaviors to promote environmental sustainability. Rich longitudinal datasets of physical, physiological, psychological, behavioral, social, behavioral, and multi-omics measures are available from our many community-based obesity prevention and treatment trials in low-income and racial/ethnic minority populations of children and adolescents and their parents.

Stanford Screenomics Lab - Human Screenome Project.

People increasingly live their lives through smartphones. Our Stanford Screenomics app captures everything that people see and do on their smartphone screens – a record of digital life – by taking a screenshot every 5 seconds. The resulting sequence of screenshots, make up an individual’s screenome, an unique and dynamic sequence of exposures, thoughts, feelings, and actions. To date, we have collected more than 350 million screenshots from 6-12 months of phone use from national samples of about 500 hundred adults and adolescents and their parents. Opportunities available to study the screenome to understand digital media use and its impacts on health and behavior,  develop novel diagnostics and prognostics from the screenome, and deliver precision interventions to improve health and well being. An opportunity to help build this paradigm-disrupting new science.

Stanford Solutions Science Lab.

The Stanford Solutions Science Lab designs solutions to improve health and well-being of children, families, and the planet.  Dr. Robinson originated the solution-oriented research paradigm. He is known for his pioneering obesity prevention and treatment research, including the concept of stealth interventions. His research applies social cognitive models of behavior change to behavioral, social, environmental and policy interventions for children and families in real world settings, making the results relevant for informing clinical and public health practice and policy. His research is largely experimental, conducting rigorous school-, family- and community-based randomized controlled trials. He studies obesity and disordered eating, nutrition, physical activity/inactivity and sedentary behavior, the effects of television and other screen time, adolescent smoking, aggressive behavior, consumerism, and behaviors to promote environmental sustainability. Rich longitudinal datasets of physical, physiological, psychological, behavioral, social, behavioral, and multi-omics measures are available from our many community-based obesity prevention and treatment trials in low-income and racial/ethnic minority populations of children and adolescents and their parents.

Stanford Screenomics Lab - Human Screenome Project.

People increasingly live their lives through smartphones. Our Stanford Screenomics app captures everything that people see and do on their smartphone screens – a record of digital life – by taking a screenshot every 5 seconds. The resulting sequence of screenshots, make up an individual’s screenome, an unique and dynamic sequence of exposures, thoughts, feelings, and actions. To date, we have collected more than 350 million screenshots from 6-12 months of phone use from national samples of about 500 hundred adults and adolescents and their parents. Opportunities available to study the screenome to understand digital media use and its impacts on health and behavior,  develop novel diagnostics and prognostics from the screenome, and deliver precision interventions to improve health and well being. An opportunity to help build this paradigm-disrupting new science.

Stanford Solutions Science Lab.

The Stanford Solutions Science Lab designs solutions to improve health and well-being of children, families, and the planet.  Dr. Robinson originated the solution-oriented research paradigm. He is known for his pioneering obesity prevention and treatment research, including the concept of stealth interventions. His research applies social cognitive models of behavior change to behavioral, social, environmental and policy interventions for children and families in real world settings, making the results relevant for informing clinical and public health practice and policy. His research is largely experimental, conducting rigorous school-, family- and community-based randomized controlled trials. He studies obesity and disordered eating, nutrition, physical activity/inactivity and sedentary behavior, the effects of television and other screen time, adolescent smoking, aggressive behavior, consumerism, and behaviors to promote environmental sustainability. Rich longitudinal datasets of physical, physiological, psychological, behavioral, social, behavioral, and multi-omics measures are available from our many community-based obesity prevention and treatment trials in low-income and racial/ethnic minority populations of children and adolescents and their parents.

Stanford Screenomics Lab - Human Screenome Project.

People increasingly live their lives through smartphones. Our Stanford Screenomics app captures everything that people see and do on their smartphone screens – a record of digital life – by taking a screenshot every 5 seconds. The resulting sequence of screenshots, make up an individual’s screenome, an unique and dynamic sequence of exposures, thoughts, feelings, and actions. To date, we have collected more than 350 million screenshots from 6-12 months of phone use from national samples of about 500 hundred adults and adolescents and their parents. Opportunities available to study the screenome to understand digital media use and its impacts on health and behavior,  develop novel diagnostics and prognostics from the screenome, and deliver precision interventions to improve health and well being. An opportunity to help build this paradigm-disrupting new science.

Together with Dan Akerib, Tom works on the LUX and LZ dark matter experiments to search for dark matter in the form of Weakly Interacting Massive Particles, or WIMPs. The detectors use liquid xenon as a target medium in a time projection chamber, or TPC. The Large Underground Xenon (LUX) experiment is currently operating a 250-kg target in the former Homestake gold mine in the Black Hills of South Dakota. Preparations are underway atSLAC to design and build the 7-ton successor, known as LUX-ZEPLIN (LZ). The group is involved in many aspects of data analysis, detector design, xenon purification, control andreadout systems, and detector performance studies.

The Wolf Research Group investigates ultrafast photochemical dynamics in isolated molecules. We are part of the Stanford PULSE Institute, a Stanford independent laboratory and a research center at SLAC National Accelerator Laboratory. Our offices and lab space are on the SLAC campus. For our research, we use SLAC’s large-scale research facilities, such as the Linac Coherent Light Source (LCLS), the world’s first hard X-ray free electron laser, and the megaelectronvolt ultrafast electron diffraction (MeV-UED) facility within LCLS.

Research overview:

How does the cell make and quality control multi-pass membrane proteins like transporters, receptors and ion channels that are essential for cellular physiology? Our lab combines mechanistic cell biology, (structural) biochemistry and protein engineering to dissect the pathways and molecular machines that mature roughly 5,000 human membrane proteins to a fully functional state. We are developing nanobody-based tools to acutely perturb such dynamic intracellular pathways directly at the protein level and assess immediate functional consequences to the nascent (membrane) proteome.

A related area of focus will be to generate highly specific reagents that can fine-tune the cellular stress responses that adjust cellular protein folding and degradation capacity. Such reagents have potential future therapeutic applications as they can be used to either correct or increase the dysregulation of protein homeostasis in neurodegeneration/ageing or cancer, respectively.

Major techniques in the lab include: mammalian cell culture, flow cytometry, FACS, CRISPR knock-outs/ knock-downs/knock-ins, genome-wide perturbation screens, phage & ribosome display, protein purification from mammalian and E. coli cells, in vitro translation and membrane insertion assays. Many of these techniques are highly sought-after in the biotech industry as well.

Tino is the first in his family to attend college (FirstGen) and this experience has shaped his approach to mentorship. The successful candidate will have access to close mentorship and will witness first-hand how to set up a new lab. The lab has fantastic resources and is surrounded by a world-class, collaborative scientific environment. Outside from the lab, life in the sunny Bay area offers spectacular culinary, cultural, and outdoor recreational opportunities. 

The Pleiner lab will be an inclusive space that fosters learning & curiosity, promotes team work and values mentorship to drive an innovative research program that pushes the boundaries of molecular biology. 

Relevant publications:
(*denotes equal contribution co-first- and † denotes co-corresponding authorship)

Stevens, T.A., Tomaleri, G.P., Hazu, M., Wei, S., Nguyen, V.N., DeKalb, C., Voorhees, R.M.† and Pleiner, T.† (2023) A nanobody-based strategy for rapid and scalable purification of native human protein complexes. Nature Protocols

Pleiner, T.*, Hazu, M.*, Pinton Tomaleri, G.*, Nguyen, V.N., Januszyk, K. and Voorhees, R.M. (2023) A selectivity filter in the ER membrane protein complex limits protein misinsertion at the ER. J Cell Biol 222 e202212007. (On the cover)

Pleiner, T., Hazu, M., Tomaleri, G.P., Januszyk, K., Oania, R.S., Sweredoski, M.J., Moradian, A., Guna, A. and Voorhees, R.M. (2021) WNK1 is an assembly factor for the human ER membrane protein complex. Mol Cell, 81, 2693-2704.e12.

Pleiner, T.*, Tomaleri, G.P.*, Januszyk, K.*, Inglis, A.J., Hazu, M. and Voorhees, R.M. (2020) Structural basis for membrane insertion by the human ER membrane protein complex. Science, 369, 433-436.

Pleiner, T.†, Bates, M.† and Görlich, D.† (2018) A toolbox of anti-mouse and anti-rabbit IgG secondary nanobodies. J Cell Biol, 217, 1143-1154.

Current research in the Martínez Group aims to make molecular modeling both predictive and routine. New approaches to interactive molecular simulation are being developed, in which users interact with a virtual-reality based molecular modeling kit that fully understands quantum mechanics. New techniques to discover heretofore unknown chemical reactions are being developed and tested, exploiting the many efficient methods that the Martínez group has introduced for solving quantum mechanical problems quickly, using a combination of physical/chemical insights and commodity videogaming hardware.

Tom's current research focuses on studying the formation and evolution of galaxies with new numerical techniques, however, he enjoys all areas of non-linear physics which can be addressed using supercomputer calculations! His research interests span dark matter dynamics, the physics of collisionless shocks, investigating the role that cosmic rays and magnetic fields play in the formation and evolution of galaxies, modeling the formation of stars and black holes as well as turbulence, and applications of numerical general relativity.

My research program uses the fruit fly Drosophila to investigate neural circuits at the cellular and molecular levels. In this context, we predominantly study circuits involved in visual processing, particularly motion detection, as well as the sensorimotor transformations that underpin visually-guided locomotion. The development of novel molecular techniques is crucial for this work. Our ongoing research encompasses three types of tools: high-speed voltage imaging using genetically encoded indicators (like those you propose to optimize) using a variety of imaging strategies, cell-type-specific gene disruption tools, and molecular perturbations of energy metabolism in the brain. In addition, we are very interested in how the molecular underpinnings of neurodegenerative diseases like Parkinson's Disease alter neuronal function, and use the fly as a model system in which to better dissect these disorders.

Singh lab - basic and translational science for parasitic amebic pathogens including gene expression, developmental control and identification of new drug regimens.

Microfludics
Diagnostics
Early Cancer Detection
Exosomes
 
 

The Demirci Bio-Acoustic MEMS in Medicine Lab (BAMM) specializes in creating technologies to manipulate cells in nanoliter volumes to enable solutions for real world problems in medicine including applications in infectious disease diagnostics and monitoring for global health, cancer early detection, cell encapsulation in nanoliter droplets for cryobiology, and bottom-up tissue engineering.
areas of research are :

Micro nano scale technologies in medicine

Extracellular vesciles

Early Cancer Detection

Biomedical engineering

microrobotics

Utkan Demirci is a professor at Stanford University School of Medicine and serves as the interim division chief and co-director of the Canary Center for Cancer Early Detection in the Department of Radiology. His group focuses on developing innovative microfluidic biomedical technology platforms with broad applications to multiple diseases. Some of his inventions have already been translated into Food and Drug Administration-approved products serving patients. He has mentored and trained many successful scientists, entrepreneurs, and academicians. Currently, the group has a strong core focused on bio fabrication, Extracellular vesicle enrichment, and isolation, small-scale robotics for biomedicine, and the development of point-of-care metamaterial-based optical sensors.

Data literacy, Data Science Education, and AI Literacy

Our lab focuses on research and design of learning experiences and resources that can provide more critical, humanistic understanding and access to increasingly pervasive STEM topics, specifically those that focus on data and AI. We research what makes these ideas challenging or less accessible and work in collaboration with educators to devise and test solutions that can range from curricula, software, or new technologies.  Work primarily involves K-12 schools although past projects have involved libraries, homes, and museums.

The Winn laboratory seeks to understand the unique biological mechanisms of human placentation. Abnormalities in placental development and function account for many obstetric complications. The pregnancy complication of preclampsia is the primary diseease process that the lab studies ,which is a major couase of maternal and fetal morbidity and mortality. While the placenta itself is one of the key characteristics for defining mammals, placental development is not highly conserved across species and therefore human placental biology is different from most available animal models: it is one of the most invasive placentas, and results in the formation of an organ comprised of cells from both the fetus and the mother. In addition to this fascinating chimerism that requires maternal immune adaptations to avoid rejection of the allograph fetus, placental cells are deeply involved in the remodeling of the maternal vasculature, in order to redirect large volumes of maternal blood to the placenta to support the developing fetus. The molecular and cellular aspects of human placenta invasion are often copted by cancers.  The placenta is also a critical endorcrine organ which orchestrates the many physiologic and metabolic changes that occur in pregnancy. As such, the investigation of this human organ covers a broad array of human biological processes.  The lab is dedicated to undertake, the challenge of shedding understanding into the human placental process of immune tolerance, vascular remodeling,  cellular invasion and endocrine function.   The Winn Lab uses a combination of human samples, in vitro cellular and organoid model systems to dissect the molecular and cellular basis of placental function as well as investigates pregnancy cohort for translational studies to improve prediction, diagnosis and treatment of obstetrical complications.  The ultimate goal of the Winn Lab is to improve pregnancy health for the pregnant person and their offspring and train the next generation of reproductive and perinatal scientists. 

Her lab seeks to understand the unique biological mechanisms of human placentation. While the placenta itself is one of the key characteristics for defining mammals, the human placenta is different from most available animal models: it is one of the most invasive placentas, and results in the formation of an organ comprised of cells from both the fetus and the mother. In addition to this fascinating chimerism, fetal cells are deeply involved in the remodeling of the maternal vasculature in order to redirect large volumes of maternal blood to the placenta to support the developing fetus. As such, the investigation of this human organ covers a large array of biological processes, and deals not only with understanding its endocrine function, but the physiologic process of immune tolerance, vascular remodeling, and cellular invasion.

As a physician scientist, Dr. Winn’s ultimate goal is to see this knowledge translate to improved clinical care resulting in healthier mothers and babies. Her lab uses a combination of molecular, cellular, tissue and translational studies in their research.

Dr. Bhalla received his training in molecular biology at UC San Francisco. His postdoctoral work centered on the regulation of aldosterone-mediated sodium transport in health and disease. In his laboratory he uses both in vitro and in vivo approaches for several projects related to the role of the kidney in health, diabetes, and hypertension. (1) Diabetic kidney disease is costly and consequential. Diabetic kidney disease is the most common form of chronic kidney disease in the world, yet no curative therapy is available. Studies of the susceptibility of diabetic kidney disease led to the discovery of differential regulation of endothelial-specific molecule-1, Esm-1 (endocan) in susceptible strains of mice. Esm-1 is a secreted proteoglycan that is enriched in glomerular endothelium and inhibits interferon signaling in glomeruli in the setting of diabetes and other inflammatory diseases. Ongoing rescue and deletion experiments explore the role of Esm-1 in diabetes and diabetic kidney disease. We also study the regulation of Esm-1 transcription and protein stability. (2) Investigation of the mechanisms of hypertension in the setting of obesity and insulin resistance using renal tubular epithelial insulin receptor deletion challenged the role of insulin in the hypertension of obesity, insulin resistance, and the metabolic syndrome. These studies also shed light on the role of insulin in control of glucose reabsorption via SGLT2. Ongoing studies focus on molecular mechanisms of insulin-regulated SGLT2 and its contrast with insulin resistant pathways in other cell types and tissues. (3) Inhibition of sodium reabsorption using diuretics is a mainstay of therapy for hypertension and edema-forming states. Study on the consequences of diuretic therapy using tubular morphometry and single cell approaches have led to additional work on mechanisms of tubular remodeling in vivo.

In our laboratory, we are at the forefront of cutting-edge research focused on the integration of cryogenic electron microscopy and tomography with state-of-the-art artificial intelligence-driven image analysis techniques. Our primary objective is to uncover distinctive and common cellular structural patterns associated with various human diseases. With access to mulitple state-of-the-art electron cryomicroscopes and cutting-edge detectors, our laboratory is well-equipped to advance the field. Our methodological innovations are motivated by the imperative to gain deeper insights into disease pathologies and to pinpoint potential therapeutic targets within cells.

We are active engaging extensive collaborations with biomedical researchers spanning diverse domains including neurodegeneration, visual impairments, viral infections, cancer and cardiovascular disorders. This collaborative approach enables us to look for possible subcellular structure patterns common to these diseases, tackle complex disease-related questions from multiple angles, enriching our understanding of these conditions and opening new avenues for potential interventions.