PRISM mentor | Research Interests |
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Nilam Ram Psychology
Psychology Last Updated: May 31, 2024 |
The Stanford Media & Psychology Lab is a multidisciplinary group focused on design and data analysis techniques for study of media and human behavior, integrating established and new disciplines to accelerate research innovations that foster innovations in psychological theory and social policy. Current research directions include emotional regulation, media and technology use, lifespan development, and new methods for analysis of intensive longitudinal analysis–including analysis of ecological momentary assessment and smartphone sensor data. Our lab is committed to global diversity and fostering minority representation in social science, and we collaborate widely with schools and departments across Stanford and other universities. |
Nilam Ram Psychology
Psychology Last Updated: May 31, 2024 |
The Stanford Screenomics Lab is a multidisciplinary group that uses newly available data streams to understand what people actually do on their smartphones, and how the content of their screen experiences relate to health and well-being. We use a variety of computer vision and text analysis tools to extract information from long sequences of screenshots, develop new descriptors of smartphone behavior and smartphone content, and examine how those behavior and content are related to users' emotions, sleep, and mental health. Our lab is committed to global diversity and fostering minority representation in social science, and we collaborate widely with schools and departments across Stanford and other universities. |
Michael Frank Psychology
Psychology Last Updated: November 11, 2021 |
How do we learn to communicate using language? I study children's language learning and how it interacts with their developing understanding of the social world. I am interested in bringing larger datasets to bear on these questions and use a wide variety of methods including eye-tracking, tablet experiments, and computational models. Recent work in my lab has focused on data-oriented approaches to development, including the creation of large datasets like Wordbank and MetaLab. I also have a strong interest in replication, reproducibility, and open science; some of our research addresses these topics.
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Michael Frank Psychology
Psychology Last Updated: February 23, 2024 |
How do we learn to communicate using language? I study children's language learning and how it interacts with their developing understanding of the social world. I am interested in bringing larger datasets to bear on these questions and use a wide variety of methods including eye-tracking, tablet experiments, and computational models. Recent work in my lab has focused on data-oriented approaches to development, including the creation of large datasets like Wordbank and MetaLab. I also have a strong interest in replication, reproducibility, and open science; some of our research addresses these topics. http://web.stanford.edu/~mcfrank |
PRISM mentor | Research Interests |
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Nilam Ram Communication
Communication Last Updated: May 31, 2024 |
The Stanford Screenomics Lab is a multidisciplinary group that uses newly available data streams to understand what people actually do on their smartphones, and how the content of their screen experiences relate to health and well-being. We use a variety of computer vision and text analysis tools to extract information from long sequences of screenshots, develop new descriptors of smartphone behavior and smartphone content, and examine how those behavior and content are related to users' emotions, sleep, and mental health. Our lab is committed to global diversity and fostering minority representation in social science, and we collaborate widely with schools and departments across Stanford and other universities. |
PRISM mentor | Research Interests |
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Nigam Shah Med: Biomedical Informatics Research (BMIR)
Med: Biomedical Informatics Research (BMIR) Last Updated: July 13, 2022 |
We analyze multiple types of health data (EHR, Claims, Wearables, Weblogs, and Patient blogs), to answer clinical questions, generate insights, and build predictive models for the learning health system. Our group runs the country's only bedside consult service to enable better medical decisions using aggregate EHR and Claims data at the point of care. Our team leads the Stanford Medicine Program for Artificial Intelligence in Healthcare, which makes predictions that allow taking mitigating actions, and studies the ethical implications of using machine learning in clinical care. We have built models for predicting future increases in cost, identifying slow healing wounds, missed diagnoses of depression and for improving palliative care.
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PRISM mentor | Research Interests |
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Nigam Shah Biomedical Data Sciences
Biomedical Data Sciences Last Updated: July 13, 2022 |
We analyze multiple types of health data (EHR, Claims, Wearables, Weblogs, and Patient blogs), to answer clinical questions, generate insights, and build predictive models for the learning health system. Our group runs the country's only bedside consult service to enable better medical decisions using aggregate EHR and Claims data at the point of care. Our team leads the Stanford Medicine Program for Artificial Intelligence in Healthcare, which makes predictions that allow taking mitigating actions, and studies the ethical implications of using machine learning in clinical care. We have built models for predicting future increases in cost, identifying slow healing wounds, missed diagnoses of depression and for improving palliative care.
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PRISM mentor | Research Interests |
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Nidhi Bhutani Orthopedic Surgery
Orthopedic Surgery Last Updated: July 13, 2022 |
Our research interests broadly encompass the molecular mechanisms regulating development, regeneration and repair with a focus on the epigenome. We are exploring epigenetic regulation in health and disease especially understanding (a) the dynamics of DNA methylation and demethylation and (b) the 3D chromatin organization. Another focus is stem cell biology and reprogramming approaches especially utilizing embryonic and induced pluripotent stem cells towards musculoskeletal regeneration and for age-associated diseases like Osteoarthritis. We are looking for highly creative and motivated postdoctoral fellows with a broad interest in Stem cell biology and Regenerative medicine. The specific research projects are focused on studying epigenetic regulation of skeletal diseases (cartilage and bone) and for understanding stem cell function in skeletal growth and regeneration. Another focus area is tissue engineering and generation of biomimetic 3D tissue models that reflect the endogenous complexity. Applicants must be PhD (cell, molecular or stem cell biology or bioengineering). |
PRISM mentor | Research Interests |
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Nicole Martinez Chemical and Systems Biology
Chemical and Systems Biology Last Updated: February 10, 2023 |
The Martinez lab studies RNA regulatory mechanisms that control gene expression. We focus on mRNA processing, RNA modifications and their roles in development and disease. |
PRISM mentor | Research Interests |
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Nicole Martinez Developmental Biology
Developmental Biology Last Updated: February 10, 2023 |
The Martinez lab studies RNA regulatory mechanisms that control gene expression. We focus on mRNA processing, RNA modifications and their roles in development and disease. |
PRISM mentor | Research Interests |
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Ngan Huang Cardiothoracic Surgery
Cardiothoracic Surgery Last Updated: January 23, 2024 |
Dr. Huang's laboratory aims to understand the chemical and mechanical interactions between extracellular matrix (ECM) proteins and pluripotent stem cells that regulate vascular and myogenic function. The fundamental insights of cell-matrix interactions are applied towards stem cell-based therapies with respect to improving cell survival and regenerative capacity, as well as engineered vascularized tissues for therapeutic transplantation. Current projects focus on various aspects of mechanical and physical factors on tissue regeneration. Examples include: 1) Cellular Biomechanics for in High Through Chemical Screening: To develop new technology for high-throughput quantitative assessment of vascular endothelial cell biomechanics for cardiovascular drug screening. We hypothesize that cellular biomechanics can be a predictive biomarker of endothelial health. 2) Engineered Matrix Microarrays to Enhance the Regenerative Potential of iPSC-Derived Endothelial Cells: We propose to develop a combinatorial family of engineered ECMs (eECMs) with independently tunable biochemical and biomechanical cues, including stiffness and stress relaxation rate for high-throughput, matrix array studies of induced pluripotent stem cell-derived endothelial cell (iPSC-EC) survival and angiogenic potential. The optimally designed eECMs will then be coinjected with iPSC-EC for treatment of peripheral arterial disease in a mouse model of hindlimb ischemia (Sponsor: NIH). 3) iPSC-Derived Smooth Muscle Progenitors for Treatment of Abdominal Aortic Aneurysm: We propose to deliver human induced pluripotent stem cell-derived smooth muscle progenitors to the site of abdominal aortic aneurysm will replenish smooth muscle cells, enhance elastin production, and abrogate wall dilatation in a murine model (Sponsor: CIRM). 4) Vascularized Cardiac Patch with Physiological Orientation for Myocardial Repair: The aims are to engineer a vascularized aligned iPSC-derived CM (cardiomyocyte) patch and elucidating the molecular mechanisms of ECM-mediated nitric oxide signaling in enhancing iPSC-CM survival and phenotype; and to determine the therapeutic effect of a vascularized aligned iPSC-derived CM patch for treatment of myocardial infarction (Sponsor: Dept of Veteran Affairs). 5) Other ongoing research areas: mRNA-based therapeutics, exosome biologics, microgravity effects on tissue regeneration and dysfunction, 3D bioprinting of engineered skeletal muscle, viscoelasticity effects on endothelial-to-mesenchymal transition, electro-osmosis for treatment of lymphedema, tissue chips for stem cell manufacturing Dr. Huang's laboratory research is funded by the National Institues of Health, Department of Defense, California Institute for Regenerative Medicine, National Science Foundation, and the Department of Veteran Affairs.
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Ngan Huang Cardiothoracic Surgery
Cardiothoracic Surgery Last Updated: August 11, 2020 |
Dr. Huang’s laboratory aims to understand the chemical and mechanical interactions between extracellular matrix (ECM) proteins and pluripotent stem cells that regulate vascular and myogenic differentiation. The fundamental insights of cell-matrix interactions are applied towards stem cell-based therapies with respect to improving cell survival and regenerative capacity, as well as engineered vascularized tissues for therapeutic implantation. Current projects focus on the role of naturally-derived ECMs to enhance endothelial differentiation of induced pluripotent stem cells on two-dimensional ECM microarrays of varying substrate rigidity. The knowledge gained from understanding cell-ECM interactions are applied towards engineering prevascularized skeletal or cardiac muscle constructs using nanotopographical cues derived from nanofibrillar ECMs. We have an opening currently for a postdoctoral fellow to develop vascularized skeletal muscle tissues for treatment of traumatic muscle injury.
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PRISM mentor | Research Interests |
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Neir Eshel Psyc: Behavioral Medicine
Psyc: Behavioral Medicine Last Updated: August 15, 2023 |
The STAAR Lab is a dynamic new neuroscience lab in Stanford’s Psychiatry Department, led by Neir Eshel, MD, PhD. We are looking to hire curious and ambitious postdocs to join our team. Lab projects focus on the neural circuitry of aggressive and compulsive behaviors, using optogenetics, in vivo imaging, electrophysiology, and sophisticated machine learning/artificial intelligence analyses of animal behavior. There are ample opportunities for career development and clinical exposure based on candidate interest. Compensation and benefits are highly competitive. The ideal postdoctoral candidate has an MD and/or PhD in neuroscience or related field and extensive experience with rodent neuroscience. Excellent analytical skills, e.g., Python & Matlab, are strongly preferred. An expert data analyst may be considered even without animal experience. We are strongly committed to diversity and inclusion. |
PRISM mentor | Research Interests |
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Neir Eshel Neuroscience Institute
Neuroscience Institute Last Updated: August 15, 2023 |
The STAAR Lab is a dynamic new neuroscience lab in Stanford’s Psychiatry Department, led by Neir Eshel, MD, PhD. We are looking to hire curious and ambitious postdocs to join our team. Lab projects focus on the neural circuitry of aggressive and compulsive behaviors, using optogenetics, in vivo imaging, electrophysiology, and sophisticated machine learning/artificial intelligence analyses of animal behavior. There are ample opportunities for career development and clinical exposure based on candidate interest. Compensation and benefits are highly competitive. The ideal postdoctoral candidate has an MD and/or PhD in neuroscience or related field and extensive experience with rodent neuroscience. Excellent analytical skills, e.g., Python & Matlab, are strongly preferred. An expert data analyst may be considered even without animal experience. We are strongly committed to diversity and inclusion. |
Michael Zeineh Neuroscience Institute
Neuroscience Institute Last Updated: January 29, 2023 |
Dr. Michael Zeineh received a B.S. in Biology at Caltech in 1995 and obtained his M.D.-Ph.D. from UCLA in 2003. After internship also at UCLA, he went on to radiology residency and neuroradiology fellowship both at Stanford. He has been faculty in Stanford Neuroradiology since 2010. He spearheads many initiatives in advanced clinical imaging at Stanford, including clinical fMRI and DTI. Simultaneously, he runs a lab with the goal of discovering new imaging abnormalities in neurodegenerative disorders, with a focus on detailed microcircuitry in regions such as the hippocampal formation using advanced, multi-modal in vivo and ex vivo methods, with applications to neurodegenerative disorders such as Alzheimer’s disease and mild traumatic brain injury.
Specific projects: Ex vivo MRI of iron in Alzheimer’s disease MR-histopathology correlation (both traditional histology and clearing methods) MR-PET of AD 7T MR in AD Analysis of iron-changes in exosomes from AD Multi-modal MRI (DTI, ASL, QSM, rsfMRI) in mild traumatic brain injury 7T MR in Epilepsy Ultra-high resolution 7T MRI X-ray imaging of iron X-ray imaging of myelin and myelin orientation Scattered light imaging Hippocampal microanatomy |
PRISM mentor | Research Interests |
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Natalie Torok Med: Gastroenterology
Med: Gastroenterology Last Updated: January 25, 2024 |
Our laboratory has been focusing on the mechanisms of fibrosis elucidating the links between activation of redox pathways, cell death, stellate cell activation and transdifferentiation to myofibroblasts. We have been interested in the role of NADPH oxidases and their cell-specific roles in liver injury and repair. We are investigating how changes in the mechanical properties of the extracellular matrix and architecture elicit changes in cellular behavior, and how these predispose to cancer invasion. While matrix stiffness in advanced fibrosis/cirrhosis and its effects on cancer progression have been extensively studied, we demonstrated how changes in viscoelasticity, independent of stiffness, impact hepatocellular carcinoma growth. This is clinically very relevant as increasing viscoelasticity could be a new risk factor foretelling more invasive features of cancer in diabetic patients. With the type 2 diabetes and steatotic liver disease epidemics, the ultimate goal is to translate our findings and develop novel therapeutic approaches that improve patient outcomes.
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PRISM mentor | Research Interests |
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Natalia Gomez-Ospina Ped: Genetics
Ped: Genetics Last Updated: May 31, 2024 |
The main focus of Dr. Gomez-Ospina’s lab is to develop therapies for patients with genetic neurodgenerative diseases. The lab uses genome editing and stem cells to produce definitive treatments for childhood neurodegenerative diseases, many of which are lysosomal storage disorders. Current projects in the lab include developing autologous transplantation of genome-edited hematopoietic stem cells for Mucopolysaccharidosis type I, Gaucher, Krabbe disease, Frontotemporal Dementia, and Friedreich's ataxia. Although there is a strong translational focus to the lab, we are also pursuing basic science questions to understand and enhance our therapies including: 1) increasing the efficiency of genome editing tools, 2) understanding microglia turnover in response to conditioning before hematopoietic stem transplant, and 3) stablishing brain-specific conditioning regimens to neurometabolic diseases. |
PRISM mentor | Research Interests |
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Natalia Gomez-Ospina Stem Cell Bio Regenerative Med
Stem Cell Bio Regenerative Med Last Updated: May 31, 2024 |
The main focus of Dr. Gomez-Ospina’s lab is to develop therapies for patients with genetic neurodgenerative diseases. The lab uses genome editing and stem cells to produce definitive treatments for childhood neurodegenerative diseases, many of which are lysosomal storage disorders. Current projects in the lab include developing autologous transplantation of genome-edited hematopoietic stem cells for Mucopolysaccharidosis type I, Gaucher, Krabbe disease, Frontotemporal Dementia, and Friedreich's ataxia. Although there is a strong translational focus to the lab, we are also pursuing basic science questions to understand and enhance our therapies including: 1) increasing the efficiency of genome editing tools, 2) understanding microglia turnover in response to conditioning before hematopoietic stem transplant, and 3) stablishing brain-specific conditioning regimens to neurometabolic diseases. |
PRISM mentor | Research Interests |
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Naima Sharaf Biology
Biology Last Updated: August 25, 2021 |
Proteins embedded in the cell envelope of bacteria perform multiple important functions, including signaling, nutrient acquisition, and export of virulence factors. Understanding the structure and functions of these proteins is critical for the development of new anti-bacterial therapies. Currently, the lab focuses on both ABC transporters and lipoproteins of Gram-negative bacteria. The ultimate goal of the research to translate basic lipoprotein research into novel therapuetics. My goal as a mentor is to contribute to my mentees’ scientific and professional development by leveraging their strengths and providing them with the tools and resources they need to pursue their desired careers. My mentoring philosophy relies on (1) maintaining honest and open communication, (2) providing feedback and guidance, (3) setting clear expectations, and (4) creating a supportive and inclusive learning environment. |
PRISM mentor | Research Interests |
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Monther Abu-Remaileh Chemical Engineering
Chemical Engineering Last Updated: August 10, 2020 |
We are interested in identifying novel pathways that enable cellular and organismal adaptation to metabolic stress and changes in environmental conditions. We also study how these pathways go awry in human diseases such as cancer, neurodegeneration and metabolic syndrome, in order to engineer new therapeutic modalities. To address these questions, our lab uses a multidisciplinary approach to study the biochemical functions of the lysosome in vitro and in vivo. Lysosomes are membrane-bound compartments that degrade macromolecules and clear damaged organelles to enable cellular adaptation to various metabolic states. Lysosomal function is critical for organismal homeostasis—mutations in genes encoding lysosomal proteins cause severe human disorders known as lysosomal storage diseases, and lysosome dysfunction is implicated in age-associated diseases including cancer, neurodegeneration and metabolic syndrome. By developing novel tools and harnessing the power of metabolomics, proteomics and functional genomics, our lab will define 1) how the lysosome communicates with other cellular compartments to fulfill the metabolic demands of the cell under various metabolic states, 2) and how its dysfunction leads to rare and common human diseases. Using insights from our research, we will engineer novel therapies to modulate the pathways that govern human disease. |
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Miriam Goodman Molecular & Cellular Phys
Molecular & Cellular Phys Last Updated: January 13, 2022 |
The @wormsenseLab at Stanford University seeks postdoctoral scholars with an interest in the genetics, biophysics, and cell biology of sensation. In appointing postdocs, we look for curiosity, excellence in the practice of reproducible research, and the ability to lead and work in teams — learning from and teaching others. You may launch research into the molecular and physical events responsible for touch and its degradation by persistent mechanical stress and chemotherapeutics. You may also propose to join NeuroPlant, an interdisciplinary, team-based discovery platform for discovering novel ligand-receptor pairs that modulate nervous system function and for deciphering the neural codes responsible for chemical attraction and repulsion. As a NeuroPlant postdoc, you will be encouraged to select a co-advisor from the project faculty team. The @wormsenseLab believes that interdisciplinary scientists are needed in diverse careers and have helped to launch former postdocs into tenure-track academic positions, research and business development in industry, start-ups, and venture capital firms. You can learn more about our researchers from this 2019 Life in a Lab profile. |
Miriam Goodman Molecular & Cellular Phys
Molecular & Cellular Phys Last Updated: August 12, 2020 |
The wormsenseLab seeks to decipher the genetic, molecular and physical basis of touch sensation and its disruption by mechanical and chemical stress, such as exposure to elevated glucose in diabetes and chemotherapeutic drugs. We use a combination of genetics, electrophysiology, and quantitative analysis of behavior and also develop new tools for delivering and measuring mechanical force. We also lead an interdisciplinary project (NeuroPlant) that uses nematode behavior to identify compounds synthesized by medicinal plants that modulate neuron function. This project also seeks to link compounds to their conserved protein receptors. |
Miriam B. Goodman Molecular & Cellular Phys
Molecular & Cellular Phys Last Updated: December 01, 2021 |
The @wormsenseLab at Stanford University seeks postdoctoral scholars with an interest in the genetics, biophysics, and cell biology of sensation. Experience with in vivo and in vitro live imaging as well as gene-editing techniques in a genetic model organism such as C. elegans is preferred, but not essential. In appointing postdocs, we look for curiosity, excellence in the practice of reproducible research, and the ability to lead and work in teams — learning from and teaching others. You may launch research into the molecular and physical events responsible for touch and its degradation by persistent mechanical stress and chemotherapeutics. The latter project involves a collaboration with Katie Wilkinson (Prof. Biology, SJSU), an expert in rodent proprioception. You may also propose to join NeuroPlant, an interdisciplinary, team-based discovery platform for discovering novel ligand-receptor pairs that modulate nervous system function and for deciphering the neural codes responsible for chemical attraction and repulsion. As a NeuroPlant postdoc, you will be encouraged to select a co-advisor from the project faculty team. The @wormsenseLab believes that interdisciplinary scientists are needed in diverse careers and have helped to launch former postdocs into tenure-track academic positions, research and business development in industry, start-ups, and venture capital firms. |
Merritt Maduke Molecular & Cellular Phys
Molecular & Cellular Phys Last Updated: July 14, 2022 |
Our research lab focuses on studying the molecular mechanisms of ion channels and transporters. We use a combination of biophysical methods to probe membrane protein structure and dynamics, together with functional assays and electrophysiological analysis. Ongoing projects in our lab include: • Examining the molecular mechanisms of chloride/proton transporters • Developing new small-molecule probes to studying mammalian chloride channels • Exploring the biophysics and physiology of the mammalian chloride channels • Using electrophysiology techniques to study the molecular effects of ultrasound neuromodulation on ion channels in brain tissue Department URL: |
Merritt Maduke Molecular & Cellular Phys
Molecular & Cellular Phys Last Updated: July 14, 2022 |
The Maduke laboratory at Stanford University is seeking a postdoctoral scholar to study the molecular mechanisms of chloride-selective channels and transporters. Chloride channels and transporters are expressed ubiquitously, with defects giving rise to human diseases of kidney and bone, disorders of blood-pressure regulation, and epilepsy. Projects in the lab seek to understand the molecular basis for these functions using a combination of electrophysiology, biochemistry, and a variety of structural and spectroscopic techniques, tightly integrated with results from computational collaborations. Experience in electrophysiology, structural biology, or membrane protein biochemistry is helpful but is not necessary. More important is a strong personal motivation and willingness to learn. Relevant publications include:
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Mirabela Rusu Radiology
Radiology Last Updated: January 12, 2022 |
The PIMed Laboratory has a multi-disciplinary direction and focuses on developing analytic methods for biomedical data integration, with a particular interest in radiology-pathology fusion to facilitate radiology image labeling . The radiology-pathology fusion allows the creation of detailed spatial labels, that later on can be used as input for advanced machine learning, such as deep learning. The recent focus of the lab has been on applying deep learning methods to detect and differentiate aggressive from indolent prostate cancers on MRI using the pathology information (both labels and the image content). Other applications include breast cancer and brain samples.
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Mirabela Rusu Radiology
Radiology Last Updated: November 29, 2021 |
The Laboratory for Integrative Personalized Medicine (PIMed) is directed by Dr. Mirabela Rusu, PhD, and is part of the School of Medicine, Department of Radiology, Division of Integrative Biomedical Imaging Informatics at Stanford University. The PIMed Laboratory has a multi-disciplinary direction and focuses on developing analytic methods for biomedical data integration, with a particular interest in radiology-pathology fusion to facilitate radiology image labeling . Such integrative methods may be applied to create comprehensive multi-scale representations of biomedical processes and pathological conditions, thus enabling their in-depth characterization. The radiology-pathology fusion allows the creation of detailed spatial labels, that later on can be used as input for advanced machine learning, such as deep learning. PIMed closely collaborates with the Urologic Cancer Innovation Lab at Stanford for the prostate cancer work. Department URL: http://radiology.stanford.edu/
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Mirabela Rusu Radiology
Radiology Last Updated: August 11, 2020 |
Dr. Mirabela Rusu directs the Laboratory for Integrative Personalized Medicine (PIMed), which is part of the School of Medicine, Department of Radiology, Division of Integrative Biomedical Imaging Informatics. PIMed focuses on developing deep learning methods for radiology-pathology integration and to characterize the appearance of diseases on radiology images using the pathology information. Such integrative methods may be applied to create comprehensive multi-scale representations of biomedical processes and pathological conditions, thus enabling their in-depth characterization and the identification of imaging signatures of pathologic conditions. Our team extensively studies the appearance of prostate cancer on MRI, but also works on breast cancers as well as non-oncologic applications. |
Michael Zeineh Radiology
Radiology Last Updated: January 29, 2023 |
Dr. Michael Zeineh received a B.S. in Biology at Caltech in 1995 and obtained his M.D.-Ph.D. from UCLA in 2003. After internship also at UCLA, he went on to radiology residency and neuroradiology fellowship both at Stanford. He has been faculty in Stanford Neuroradiology since 2010. He spearheads many initiatives in advanced clinical imaging at Stanford, including clinical fMRI and DTI. Simultaneously, he runs a lab with the goal of discovering new imaging abnormalities in neurodegenerative disorders, with a focus on detailed microcircuitry in regions such as the hippocampal formation using advanced, multi-modal in vivo and ex vivo methods, with applications to neurodegenerative disorders such as Alzheimer’s disease and mild traumatic brain injury.
Specific projects: Ex vivo MRI of iron in Alzheimer’s disease MR-histopathology correlation (both traditional histology and clearing methods) MR-PET of AD 7T MR in AD Analysis of iron-changes in exosomes from AD Multi-modal MRI (DTI, ASL, QSM, rsfMRI) in mild traumatic brain injury 7T MR in Epilepsy Ultra-high resolution 7T MRI X-ray imaging of iron X-ray imaging of myelin and myelin orientation Scattered light imaging Hippocampal microanatomy |
Michael Zeineh Radiology
Radiology Last Updated: July 14, 2022 |
My lab focuses on translating advanced MRI into clinical practice. In Alzheimer’s disease, we are investigating the nature of iron deposition to understand how iron interacts with inflammation, amyloid, and tau in the progression of AD. We bring to this disease the full arsenal of imaging: ultra-high resolution MRI of human AD specimens coupled with novel histological methods including x-ray microscopy and electron microscopy. We bring this armamentarium full circle to living human imaging with 7.0T MR and multi-tracer PET-MR. In mild traumatic brain injury, we are studying the imaging signatures of brain insult that occur in high-contact sports using advanced MRI combined with mouthguard accelerometer measurements of impacts. In chronic fatigue syndrome, we are identifying microstructural changes that accompany fatigue and correlate with systemic circulating cytokines that together may form a biomarker for this disorder. |
Michael Zeineh Radiology
Radiology Last Updated: July 14, 2022 |
My lab focuses on translating advanced MRI into clinical practice. In Alzheimer's disease, we are investigating the nature of iron deposition to understand how iron interacts with inflammation, amyloid, and tau in the progression of AD. We bring to this disease the full arsenal of imaging: ultra-high resolution MRI of human AD specimens coupled with novel histological methods including x-ray microscopy and electron microscopy. We bring this armamentarium full circle to living human imaging with 7.0T MR and multi-tracer PET-MR. In mild traumatic brain injury, we are studying the imaging signatures of brain insult that occur in high-contact sports using advanced MRI combined with mouthguard accelerometer measurements of impacts. In chronic fatigue syndrome, we are identifying microstructural changes that accompany fatigue and correlate with systemic circulating cytokines that together may form a biomarker for this disorder. |
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Mirabela Rusu HumanCentered Artificial Inte
HumanCentered Artificial Inte Last Updated: January 12, 2022 |
The PIMed Laboratory has a multi-disciplinary direction and focuses on developing analytic methods for biomedical data integration, with a particular interest in radiology-pathology fusion to facilitate radiology image labeling . The radiology-pathology fusion allows the creation of detailed spatial labels, that later on can be used as input for advanced machine learning, such as deep learning. The recent focus of the lab has been on applying deep learning methods to detect and differentiate aggressive from indolent prostate cancers on MRI using the pathology information (both labels and the image content). Other applications include breast cancer and brain samples.
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Mildred Cho Center for Biomedical Ethics
Center for Biomedical Ethics Last Updated: February 01, 2022 |
Stanford Training Program in Ethical, Legal, and Social Implications (ELSI) Research
Job description: The postdoctoral fellow will conduct independent research on ethical, legal and social considerations arising from genetics and genomics. The fellow will be part of an interdisciplinary community including faculty and fellows from this program and other affiliated programs. Fellows are expected to gain practical experience in professional activities through programs such as the Stanford Benchside Ethics Consultation Service, a research ethics consultation program to assist life sciences researchers in the resolution of ethical concerns in their research, one of the Stanford-affiliated clinical ethics consultation services, and/or teaching. In addition to participating in SCBE and CIRGE activities, fellows will have access to a full range of courses at Stanford University, which includes genetics, social science, humanities and law courses. It is expected that the fellow may need formal coursework in genetics, ethics, or ELSI research methods. Mentors will assist the fellow in formulating an individualized curriculum and career strategies. All trainees will be expected to present their research in scholarly venues. Fellowship support includes a stipend, tuition, and health insurance. Funds will be provided by the fellowship for each fellow to travel to one meeting per year. For more information, please see our website.
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Michelle Odden Epidemiology and Population Health
Epidemiology and Population Health Last Updated: March 15, 2022 |
Michelle Odden, PhD, is an Associate Professor in the Department of Epidemiology and Population Health (E&PH) in the Stanford School of Medicine and a Research Scientist in the Geriatric Research, Education, and Clinical Center (GRECC) in the VA Palo Alto Health Care System. Her research aims to improve our understanding of the optimal preventive strategies for chronic disease in older adults, particularly those who have been underrepresented in research including the very old, frail, and racial/ethnic minorities. Her work has focused on prevention of cardiovascular and kidney outcomes, as well as preservation of physical and cognitive function in older adults. Additionally, she has new projects in mitochondrial genetics and the proteomic signature of aging. Dr. Odden’s methodologic focus in in causal inference and methods to reduce biases in observational studies. She also serves as the Chair of the E&PH Justice, Equity, Diversity, and Inclusion Committee. |
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Michelle Lin Surg: Emergency Medicine
Surg: Emergency Medicine Last Updated: October 26, 2022 |
Dr. Lin's active NIH-funded research portfolio includes developing a novel patient-reported outcome measure for emergency asthma care; evaluating post-acute transitions and outcomes for high-risk populations; and enhancing gender equity in the health professions workforce. Her prior funded projects have evaluated the impact of value-based care on emergency care delivery and payment; drivers of ED admission rates; and changes in the intensity of emergency care.
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Michal Bajdich SLAC National Accelerator Lab
SLAC National Accelerator Lab Last Updated: January 27, 2023 |
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Michael Ftoney SLAC National Accelerator Lab
SLAC National Accelerator Lab Last Updated: February 23, 2024 |
Our research is focused on structural characterization of materials used for energy conversion and storage and for desalination. We use X-ray techniques at SSRL to establish structure-function relationships in complex materials. |
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Michal Bajdich SUNCAT Center for Interface Science and Catalysis
SUNCAT Center for Interface Science and Catalysis Last Updated: January 27, 2023 |
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Michal Bajdich Energy Science Engineering
Energy Science Engineering Last Updated: January 27, 2023 |
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Michaelle Mayalu Mechanical Engineering
Mechanical Engineering Last Updated: November 02, 2022 |
We are an interdisciplinary research laboratory that focuses on model-based analysis, design, and control of biological function at the molecular, cellular, and organismal levels to optimize therapeutic intervention. Near-future research directions
The Mayalu Lab is seeking bright, talented, and motivated graduate students and postdocs to fill several positions. These are great opportunities to work on control theoretic and experimental aspects of model-based design of synthetic biological and biomedical systems. Postdocs with additional training in synthetic microbiology, genetic recombination technology, bioengineering or related fields are encouraged to apply to help launch the experimental research program. |
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Michael Zeineh Radiology-RSL
Radiology-RSL Last Updated: January 29, 2023 |
Dr. Michael Zeineh received a B.S. in Biology at Caltech in 1995 and obtained his M.D.-Ph.D. from UCLA in 2003. After internship also at UCLA, he went on to radiology residency and neuroradiology fellowship both at Stanford. He has been faculty in Stanford Neuroradiology since 2010. He spearheads many initiatives in advanced clinical imaging at Stanford, including clinical fMRI and DTI. Simultaneously, he runs a lab with the goal of discovering new imaging abnormalities in neurodegenerative disorders, with a focus on detailed microcircuitry in regions such as the hippocampal formation using advanced, multi-modal in vivo and ex vivo methods, with applications to neurodegenerative disorders such as Alzheimer’s disease and mild traumatic brain injury.
Specific projects: Ex vivo MRI of iron in Alzheimer’s disease MR-histopathology correlation (both traditional histology and clearing methods) MR-PET of AD 7T MR in AD Analysis of iron-changes in exosomes from AD Multi-modal MRI (DTI, ASL, QSM, rsfMRI) in mild traumatic brain injury 7T MR in Epilepsy Ultra-high resolution 7T MRI X-ray imaging of iron X-ray imaging of myelin and myelin orientation Scattered light imaging Hippocampal microanatomy |
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Michael Kapiloff Ophthalmology
Ophthalmology Last Updated: July 13, 2022 |
Specificity and efficacy in intracellular signal transduction can be conferred by the anchoring and co-localization of key enzymes and their upstream activators and substrate effectors by scaffold proteins. The Kapiloff lab investigates “signalosomes” formed by scaffold proteins, asking fundamental questions such as: 1) how are signalosomes constituted; 2) how are upstream signals integrated by signalosomes to regulate in a concerted manner downstream effectors; 3) what is the physiologic relevance of these signalosomes; and 4) can signalosomes be targeted in a clinically relevant manner so as to constitute new therapeutic strategies. In particular, the Kapiloff lab studies signaling within the myocardium and retina. Using a comprehensive approach that includes biochemistry, cell biology, and in vivo physiology, ongoing projects address the regulation of pathological cardiac remodeling and the effects of disease on retinal neurons.
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Michael Kapiloff Med: Cardiovascular Medicine
Med: Cardiovascular Medicine Last Updated: July 13, 2022 |
Specificity and efficacy in intracellular signal transduction can be conferred by the anchoring and co-localization of key enzymes and their upstream activators and substrate effectors by scaffold proteins. The Kapiloff lab investigates “signalosomes” formed by scaffold proteins, asking fundamental questions such as: 1) how are signalosomes constituted; 2) how are upstream signals integrated by signalosomes to regulate in a concerted manner downstream effectors; 3) what is the physiologic relevance of these signalosomes; and 4) can signalosomes be targeted in a clinically relevant manner so as to constitute new therapeutic strategies. In particular, the Kapiloff lab studies signaling within the myocardium and retina. Using a comprehensive approach that includes biochemistry, cell biology, and in vivo physiology, ongoing projects address the regulation of pathological cardiac remodeling and the effects of disease on retinal neurons.
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Michael Jewett Bioengineering
Bioengineering Last Updated: January 23, 2024 |
We develop data-driven, multiplexed methods to elucidate fundamental principles about how the living world works. We use the knowledge from these insights to develop cell-free biotechnologies for decentralized biomanufacturing, portable diagnostics, and educational kits to serve human needs. A key feature of our work is an emphasis on advancing and applying our capacity to partner with biology to make what is needed, where and when it is needed, on a sustainable and renewable basis. Our work holds promise to transform bioengineering applications in health, manufacturing, sustainability, and education, anywhere on earth and even beyond. |
Michael Fischbach Bioengineering
Bioengineering Last Updated: February 23, 2024 |
Small molecules from the human microbiota. Many of the most widely used human medicines come from soil and marine bacteria, including treatments for cancer, infectious disease, diabetes, and organ transplant. We have recently found that bacteria from a surprisingly underexplored niche -- the human body -- are prolific producers of drug-like small molecules. We are identifying small molecules from gut- and skin-associated bacteria, studying their biosynthetic genes, and characterizing the roles they play in human biology and disease. Using synthetic ecology to control microbiome metabolism. One of the most concrete contributions the microbiome makes to human biology is to synthesize dozens of metabolites, many of which accumulate in human tissues at concentrations similar to what is achieved by a drug. We are engineering gut and skin bacterial species to produce new molecules, and constructing synthetic communities whose molecular output is completely specified. |
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Michael Howitt Pathology
Pathology Last Updated: February 23, 2024 |
Our lab is broadly interested in how intestinal microbes shape our immune system to promote both health and disease. Recently we discovered that a type of intestinal epithelial cell, called tuft cells, act as sentinels stationed along the lining of the gut. Tuft cells respond to microbes, including parasites, to initiate type 2 immunity, remodel the epithelium, and alter gut physiology. Surprisingly, these changes to the intestine rely on the same chemosensory pathway found in oral taste cells. Currently, we aim to 1) elucidate the role of specific tuft cell receptors in microbial detection. 2) To understand how protozoa and bacteria within the microbiota impact host immunity. 3) Discover how tuft cells modulate surrounding cells and tissue.
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Michael Howitt Microbiology and Immunology
Microbiology and Immunology Last Updated: February 23, 2024 |
Our lab is broadly interested in how intestinal microbes shape our immune system to promote both health and disease. Recently we discovered that a type of intestinal epithelial cell, called tuft cells, act as sentinels stationed along the lining of the gut. Tuft cells respond to microbes, including parasites, to initiate type 2 immunity, remodel the epithelium, and alter gut physiology. Surprisingly, these changes to the intestine rely on the same chemosensory pathway found in oral taste cells. Currently, we aim to 1) elucidate the role of specific tuft cell receptors in microbial detection. 2) To understand how protozoa and bacteria within the microbiota impact host immunity. 3) Discover how tuft cells modulate surrounding cells and tissue.
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Michael Bernstein Computer Science
Computer Science Last Updated: January 24, 2022 |
I design, build, and study social computing systems: the computational systems that mediate our social interactions with one another. My research sits in an area known as human-computer interaction (HCI). |
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Melody Smith Med: Bone Marrow Transplant
Med: Bone Marrow Transplant Last Updated: November 10, 2021 |
Our lab focuses on the biology of chimeric antigen receptor (CAR) T cells in order to improve the efficacy and safety of this therapy (1) by investigating donor and third-party CAR T cells in an immunocompetent mouse model of allogeneic hematopoietic cell transplant (allo-HCT) and (2) by assessing the impact of the intestinal microbiome on CAR T cell response. We will seek to enhance the development, administration, and mechanistic understanding of how to safely administer donor and third-party CAR T cells with the aim to potentially translate our work to the clinic. We will investigate the regulatory mechanism of the impact of bacterial taxa and the metabolites that they produce on CAR T cell outcomes.
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Melanie Hayden Gephart Neurosurgery
Neurosurgery Last Updated: February 23, 2024 |
We seek greater understanding of the genetic and epigenetic mechanisms driving tumorigenesis and disease progression in malignant brain tumors. We currently study the capacity of cellular and cell-free nucleic acids to inform treatment choices in patients with brain tumors, mechanisms of brain tumor cell migration, and identify potentially targetable genes and pathways. Our laboratory space lies at the heart of the Stanford campus between the core campus and the medical facilities, emblematic of the translational aspects of our work. |